STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2942Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase,UbiD family; Involved in tannin degradation. Catalyzes the decarboxylation of gallic acid and protocatechuic acid to pyrogallol and catechol, respectively; Belongs to the UbiD family.
 
  
 0.839
lpdD
Aromatic acid carboxylyase, subunit D; Probably involved in tannin degradation, however the precise biochemical function in metabolism of gallate is unknown.
 
  
 0.817
lp_2943
Cation transport protein.
 
  
 0.794
lp_0194
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.774
lp_1258
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.767
lp_0057
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.761
lp_3502
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.753
lp_0951
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.747
mleR2
Malolactic regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.737
mleR1
Malolactic regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.735
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.