STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ubiD3-octaprenyl-4-hydroxybenzoate carboxy-lyase,UbiD family; Involved in tannin degradation. Catalyzes the decarboxylation of gallic acid and protocatechuic acid to pyrogallol and catechol, respectively; Belongs to the UbiD family. (490 aa)    
Predicted Functional Partners:
lpdB
Aromatic acid carboxylyase, subunit B; Involved in tannin degradation. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for gallate decarboxylase LpdC. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. Belongs to the UbiX/PAD1 family.
 
 
 0.999
lpdD
Aromatic acid carboxylyase, subunit D; Probably involved in tannin degradation, however the precise biochemical function in metabolism of gallate is unknown.
 
 
 0.996
lp_2943
Cation transport protein.
 
   
 0.886
lp_2942
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
  
 0.839
tanL
Tannase (tannin acylhydrolase).
 
  
 0.757
lp_2940
Cell surface protein precursor, LPXTG-motif cell wall anchor.
   
  
 0.650
padA
Phenolic acid decarboxylase.
   
  
 0.604
lp_0796
Carboxylesterase.
   
  
 0.507
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
  
 0.505
lp_0274
Transcription regulator, TetR family.
      
 0.503
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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