STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livCBranched-chain amino acid ABC transporter,permease protein; Belongs to the binding-protein-dependent transport system permease family. (320 aa)    
Predicted Functional Partners:
livE
Branched-chain amino acid ABC transporter,ATP-binding protein.
 
 0.999
livD
Branched-chain amino acid ABC transporter,ATP-binding protein.
 
 0.999
livB
Branched-chain amino acid ABC transporter,permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livA
Branched-chain amino acid ABC transporter,substrate binding protein.
 
 
 0.999
acuB-C
Acetoin utilization protein, C-terminal fragment.
 
    0.967
acuB-N
Acetoin utilization protein, N-terminal fragment.
 
    0.967
glnQ1
Glutamine ABC transporter, ATP-binding protein.
 
 
  
 0.910
glnQ3
Glutamine ABC transporter, ATP-binding protein.
 
    
 0.908
lp_1335
ABC transporter, ATP-binding protein.
 
    0.903
glnQ4
Glutamine/histidine ABC transporter,ATP-binding protein.
 
    
 0.901
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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