STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2998Hypothetical membrane protein. (188 aa)    
Predicted Functional Partners:
lp_2996
Transcription regulator, ArsR family,C-terminal fragment.
 
  
 0.900
lp_2997
Transcription regulator, ArsR family,N-terminal fragment.
  
    0.712
lp_2995
Hypothetical membrane protein.
  
    0.575
lp_1857
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.534
lp_2715
Hypothetical membrane protein.
  
     0.496
ica3
Glycosyltransferase, family 2.
  
     0.476
lp_1525
Hypothetical membrane protein.
  
    0.470
lp_3000
ABC transporter, ATP-binding and permease protein.
  
     0.453
ica1
Glycosyltransferase, family 2.
  
    0.434
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.