STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3014Extracellular transglycosylase, with LysM peptidoglycan binding domain. (204 aa)    
Predicted Functional Partners:
lp_0302
Extracellular transglycosylase.
  
  
0.843
lp_3050
Extracellular transglycosylase, membrane-bound.
  
  
 0.670
lp_0984
Hypothetical protein.
  
    0.657
lp_0625
Prophage P1 protein 2, mitogenic factor, cell surface lipoprotein.
  
     0.654
lp_2160
Hypothetical protein.
  
     0.620
lp_3278
Amino acid transport protein.
   
  
 0.554
lp_3322
Hypothetical protein.
  
    0.553
pnuC1
Nicotinamide mononucleotide transporter.
   
  
 0.551
mtsC
Manganese ABC transporter, ATP-binding protein.
   
  
 0.548
livA
Branched-chain amino acid ABC transporter,substrate binding protein.
      
 0.545
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.