Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| lp_3018 | lp_3019 | lp_3018 | lp_3019 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | Extracellular protein, membrane-anchored. | 0.543 |
| lp_3018 | mtsB | lp_3018 | lp_1096 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | Manganese ABC transporter, permease protein. | 0.888 |
| lp_3018 | mtsC | lp_3018 | lp_1095 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | Manganese ABC transporter, ATP-binding protein. | 0.861 |
| lp_3018 | rpmB | lp_3018 | lp_1624 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.456 |
| lp_3018 | rpsN | lp_3018 | lp_1048 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.444 |
| lp_3018 | rpsN2 | lp_3018 | lp_2216 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 30S ribosomal protein S14-2; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.448 |
| lp_3018 | znuB | lp_3018 | lp_0464 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | Zinc/iron ABC transporter, permease protein. | 0.919 |
| lp_3018 | znuC | lp_3018 | lp_0463 | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | Zinc/iron ABC transporter, ATP-binding protein. | 0.899 |
| lp_3019 | lp_3018 | lp_3019 | lp_3018 | Extracellular protein, membrane-anchored. | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 0.543 |
| mtsB | lp_3018 | lp_1096 | lp_3018 | Manganese ABC transporter, permease protein. | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 0.888 |
| mtsB | mtsC | lp_1096 | lp_1095 | Manganese ABC transporter, permease protein. | Manganese ABC transporter, ATP-binding protein. | 0.999 |
| mtsB | znuB | lp_1096 | lp_0464 | Manganese ABC transporter, permease protein. | Zinc/iron ABC transporter, permease protein. | 0.565 |
| mtsB | znuC | lp_1096 | lp_0463 | Manganese ABC transporter, permease protein. | Zinc/iron ABC transporter, ATP-binding protein. | 0.964 |
| mtsC | lp_3018 | lp_1095 | lp_3018 | Manganese ABC transporter, ATP-binding protein. | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 0.861 |
| mtsC | mtsB | lp_1095 | lp_1096 | Manganese ABC transporter, ATP-binding protein. | Manganese ABC transporter, permease protein. | 0.999 |
| mtsC | znuB | lp_1095 | lp_0464 | Manganese ABC transporter, ATP-binding protein. | Zinc/iron ABC transporter, permease protein. | 0.959 |
| rpmB | lp_3018 | lp_1624 | lp_3018 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 0.456 |
| rpmB | rpsN | lp_1624 | lp_1048 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.953 |
| rpmB | rpsN2 | lp_1624 | lp_2216 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S14-2; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.967 |
| rpsN | lp_3018 | lp_1048 | lp_3018 | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. | 0.444 |
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