STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3021Diguanylate cyclase/phosphodiesterase, GGDEF domain. (378 aa)    
Predicted Functional Partners:
lp_2930
Diguanylate cyclase/phosphodiesterase, EAL domain.
 
 
 0.824
lp_0765
Diguanylate cyclase/phosphodiesterase, EAL domain.
 
 
 0.817
lp_0758
Diguanylate cyclase/phosphodiesterase, EAL domain.
 
 
 0.813
lp_0823
Diguanylate cyclase/phosphodiesterase, EAL domain.
 
 
 0.795
lp_2714
Diguanylate cyclase/phosphodiesterase, EAL domain.
  
 
 0.745
lp_3450
Cell surface protein, CscC family.
  
    0.542
lp_2524
Diguanylate cyclase/phosphodiesterase, GGDEF domain.
 
 
0.502
lp_0297
Extracellular protein, CscC family.
  
     0.495
lp_3676
Cell surface protein precursor, CscC family.
  
     0.494
rrp2
Two-component system response regulator.
 
 
 0.465
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.