STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3022Hypothetical protein. (141 aa)    
Predicted Functional Partners:
umuC
DNA polymerase V, subunit UmuC.
 
  
 0.992
lp_3141
Hypothetical protein, DUF3781 family.
   
  
 0.817
lp_1611
Hypothetical protein.
   
  
 0.805
dinP
DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
    0.723
lp_3142
Type 1 glutamine amidotransferase (GATase1)-like domain protein, ThiJ/PfpI family.
   
    0.703
lp_0960
Hypothetical protein.
   
    0.702
lp_2224
Dithiol-disulfide isomerase, DsbA family,FrnE-like subfamily.
   
  
 0.653
lp_0030
Pyridoxamine 5'-phosphate oxidase family protein, FMN-binding.
   
  
 0.647
brnE
Branched-chain amino acid transport protein.
   
  
 0.644
lp_2939
Hypothetical protein.
      
 0.636
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.