STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3024Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
lp_1914
Transcription regulator, MarR family.
   
    0.592
baiE
Bile acid 7-alpha-dehydratase.
  
    0.590
lp_3029
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6.
 
     0.581
lp_1669
Transcription regulator, AraC family.
  
  
 0.572
lp_1422
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.547
lp_0194
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.546
lp_3025
Extracellular protein, membrane-anchored.
  
    0.533
umuC
DNA polymerase V, subunit UmuC.
 
  
 0.519
lp_3033
Short-chain dehydrogenase/oxidoreductase.
 
   
 0.514
lp_3030
Phosphatidyl-ethanolamine binding protein (PEBP).
 
     0.513
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.