STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3034Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6. (218 aa)    
Predicted Functional Partners:
lp_1930
Oxidoreductase, atypical SDR family, subgroup 6.
  
     0.770
lp_3033
Short-chain dehydrogenase/oxidoreductase.
  
    0.768
lp_3032
Hypothetical protein.
  
    0.710
lp_3030
Phosphatidyl-ethanolamine binding protein (PEBP).
 
    0.691
lp_3031
Hypothetical protein.
  
    0.673
lp_3029
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6.
 
   
0.647
lp_3027
Hypothetical membrane protein, N-terminal fragment (pseudogene).
  
    0.543
lp_3028
Hypothetical membrane protein, C-terminal fragment (pseudogene).
  
    0.540
lp_2453
Prophage P2a protein 4; AAA ATPase.
  
    0.475
lp_3026
Short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.444
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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