STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_3045Short-chain dehydrogenase/oxidoreductase,classical SDR family, subgroup 1. (296 aa)    
Predicted Functional Partners:
dps1
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
  
  
 0.764
lp_3353
Hypothetical protein.
   
    0.704
lp_1700
Hypothetical membrane protein, TspO/MBR family.
  
    0.683
lp_0513
Hypothetical protein.
  
    0.554
lp_1163
Nucleotide-binding protein, universal stress protein UspA family.
   
    0.553
lp_0163
acyl-CoA dehydrogenase domain protein.
  
 0.552
lp_0026
Hydrolase, HAD superfamily, Cof family.
   
    0.535
lp_0381
Ankyrin repeat family protein.
   
 0.507
pmg9
Phosphoglycerate mutase family protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
  
 0.504
dus2
tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
 
   0.502
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.