STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3048Transcription regulator, Xre family. (273 aa)    
Predicted Functional Partners:
lp_3047
Hypothetical protein.
 
    0.915
lp_3676
Cell surface protein precursor, CscC family.
  
    0.550
lp_3142
Type 1 glutamine amidotransferase (GATase1)-like domain protein, ThiJ/PfpI family.
  
  
 0.527
lp_1911
Transcription regulator, MarR family.
  
   0.518
lp_3049
Amino acid transport protein.
  
    0.503
lp_0301
Membrane-bound protease, CAAX family.
  
    0.500
lp_1659
Isochorismatase.
 
  
 0.486
lp_1757
Transcription regulator, ArsR family.
  
    0.477
lp_3251
3',5'-cyclic-nucleotide phosphodiesterase.
  
     0.466
lp_2820
Hypothetical membrane protein, DUF1440 family.
  
    0.462
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.