STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3070Fe-S cluster biosynthesis protein; Belongs to the HesB/IscA family. (131 aa)    
Predicted Functional Partners:
lp_3069
Medium-chain degydrogenase/reductase, Qor family.
  
    0.907
dps2
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
   
    0.704
lp_3442
Heavy metal binding protein.
   
    0.703
lp_3071
Hypothetical protein, DUF2174 family.
  
    0.556
lp_2754
Hypothetical membrane protein.
  
     0.527
lp_1081
Hypothetical protein.
  
     0.524
lp_2473
Prophage P2b protein 8, helicase.
  
    0.493
lp_0078
Permease, drug/metabolite transporter (DMT) superfamily.
  
    0.464
lp_1806
Hypothetical protein, DUF960 family.
  
     0.464
lp_1913
Hypothetical protein.
  
    0.439
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.