STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3080Hypothetical membrane protein. (225 aa)    
Predicted Functional Partners:
lp_3079
Transcription regulator, PadR family.
 
  
 0.912
lp_0584
Transport protein, major facilitator superfamily (MFS).
  
     0.702
lp_3078
(pyro)phosphohydrolase, HAD superfamily.
     
 0.511
lp_2917
Transport protein, major facilitator superfamily (MFS).
  
     0.480
lp_2084
Transport protein, major facilitator superfamily (MFS).
  
    0.447
lp_2907
Acetyltransferase, GNAT family.
 
  
 0.416
ropB
Transcription regulator, TetR family.
  
    0.415
lp_0183
Hypothetical membrane protein.
  
     0.405
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.