STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3090Transcription regulator, TetR family. (193 aa)    
Predicted Functional Partners:
lp_3091
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 1.
 
     0.896
lp_2713
Hypothetical protein.
 
     0.757
lp_1643
Mucus-binding protein precursor, LPXTG-motif cell wall anchor.
  
    0.681
lp_3097
Transcription regulator, TetR family.
  
     0.615
lp_3114
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
    0.590
lp_3098
NAD-dependent epimerase/dehydratase family protein.
 
     0.539
lp_0557
Serine/threonine protein phosphatase.
  
    0.519
lp_2145
Extracellular protein, cell-wall anchored.
  
    0.511
gabD
Succinate-semialdehyde dehydrogenase (NAD(P)+).
  
  
 0.469
lp_3060
Transcription regulator, AraC family.
  
   
 0.468
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.