STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3093Lysozyme/muramidase, glycoside hydrolase family 25. (860 aa)    
Predicted Functional Partners:
lp_2480
Prophage P2b protein 1, integrase; Belongs to the 'phage' integrase family.
   
  
 0.716
cps3F
Polysaccharide biosynthesis membrane protein.
  
    0.715
lp_1446
Cell surface protein, CscB family.
  
    0.715
lp_0624
Prophage P1 protein 1, integrase; Belongs to the 'phage' integrase family.
   
  
 0.713
lp_3164
Transcription regulator, TetR family.
   
  
 0.712
lp_0687
Prophage P1 protein 64.
     
 0.711
lp_0373
Cell surface protein precursor, LPXTG-motif cell wall anchor.
     
 0.710
lp_3590
Hypothetical protein, DUF1694 family.
      
 0.706
lp_1233
Priming glycosyltransferase,undecaprenyl-phosphate beta-glucosephosphotransferase.
  
  
 0.670
lp_2486
Mucus-binding protein, LPXTG-motif cell wall anchor.
 
  
 0.654
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.