Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
lp_3124Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
lp_3125
Fumarate reductase, flavoprotein subunit precursor.
 
    0.847
lp_1685
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.722
lp_0951
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.698
lp_3502
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.666
mleR2
Malolactic regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.631
lp_2689
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.626
lp_0057
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.619
mleR1
Malolactic regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.587
lp_3123
NADH pyrophosphatase, Nudix family.
       0.473
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.460
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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