STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dps1DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family. (155 aa)    
Predicted Functional Partners:
lp_3045
Short-chain dehydrogenase/oxidoreductase,classical SDR family, subgroup 1.
  
  
 0.762
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.761
lp_2588
Cell surface adherence protein,collagen-binding domain, LPXTG-motif cell wall anchor.
      
 0.756
lp_1163
Nucleotide-binding protein, universal stress protein UspA family.
   
  
 0.737
lp_3442
Heavy metal binding protein.
  
  
 0.711
lp_2521
Transcription regulator, AsnC-type.
   
  
 0.706
lp_3215
Hypothetical protein.
      
 0.688
dps2
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
      
 0.688
lp_1159
Extracellular protein, membrane-bound.
   
    0.594
lp_1708
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.577
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.