STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3136Sugar-specific permease, SgaT/UlaA family. (458 aa)    
Predicted Functional Partners:
pts25B
PTS system, EIIB component.
 
  
 0.955
lp_3138
Bifunctional protein: transcriptional antiterminator, BglG family; PTS system, EIIA component.
 
    0.944
lp_3543
Bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component.
 
  
 0.838
pts34B
PTS system, lactose/cellobiose-specific EIIB component.
 
  
 0.829
pts34A
PTS system, mannitol-specific EIIA component.
 
  
 0.811
nox3
NADH oxidase.
   
    0.701
tkt3
Transketolase; Belongs to the transketolase family.
  
  
 0.667
rpmE
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily.
   
    0.532
ribB
Riboflavin synthase, alpha chain.
   
    0.532
fruA
PTS system, fructose-specific EIIABC component.
  
  
 0.506
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.