Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_3136Sugar-specific permease, SgaT/UlaA family. (458 aa)    
Predicted Functional Partners:
pts25B
PTS system, EIIB component.
 
  
 0.953
lp_3138
Bifunctional protein: transcriptional antiterminator, BglG family; PTS system, EIIA component.
 
    0.944
lp_3543
Bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component.
 
  
 0.826
pts34B
PTS system, lactose/cellobiose-specific EIIB component.
 
   
 0.818
pts34A
PTS system, mannitol-specific EIIA component.
 
  
 0.807
tkt3
Transketolase; Belongs to the transketolase family.
  
  
 0.677
fruA
PTS system, fructose-specific EIIABC component.
  
  
 0.668
tkt1A
Transketolase, thiamine diphosphate binding domain.
  
 0.439
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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