STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3141Hypothetical protein, DUF3781 family. (91 aa)    
Predicted Functional Partners:
lp_3022
Hypothetical protein.
   
  
 0.817
lp_3142
Type 1 glutamine amidotransferase (GATase1)-like domain protein, ThiJ/PfpI family.
  
    0.755
umuC
DNA polymerase V, subunit UmuC.
   
  
 0.703
lp_1611
Hypothetical protein.
   
  
 0.673
lp_0030
Pyridoxamine 5'-phosphate oxidase family protein, FMN-binding.
   
  
 0.653
lp_2224
Dithiol-disulfide isomerase, DsbA family,FrnE-like subfamily.
   
  
 0.645
brnE
Branched-chain amino acid transport protein.
      
 0.636
lp_2939
Hypothetical protein.
      
 0.636
lp_0091
Pyridoxamine 5'-phosphate oxidase family protein, FMN-binding.
  
  
 0.605
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
  
 0.555
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.