STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3150Malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (362 aa)    
Predicted Functional Partners:
lp_3114
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
   
 0.758
lp_3549
Transcription regulator, DeoR family.
      
 0.634
pts37BC
PTS system, glucitol/sorbitol-specific EIIB component and second of two IIC components.
      
 0.634
lp_3591
Hypothetical membrane protein.
      
 0.540
tarJ
Ribitol-5-phosphate 2-dehydrogenase; Catalyzes the NADPH dependent reduction of D-ribulose 5- phosphate to D-ribitol 5-phosphate; Belongs to the zinc-containing alcohol dehydrogenase family.
  
  
 0.511
iolT1
Myo-inositol (and similar sugars) transporter,major facilitator superfamily (MFS); Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.503
panE
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.483
acm3-C
Cell wall hydrolase/muramidase, C-terminal fragment.
   
    0.475
srlD2
Sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.451
tarL
Ribitolphosphotransferase.
   
  
 0.438
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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