STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acm3-MCell wall hydrolase/muramidase, middle fragment. (150 aa)    
Predicted Functional Partners:
acm3-C
Cell wall hydrolase/muramidase, C-terminal fragment.
 
   
0.965
lp_3155
Cell surface protein, ErfK family.
  
  
 0.666
lp_1571
Membrane-bound protease, rhomboid family.
  
   0.619
acm3-N
Cell wall hydrolase/muramidase, N-terminal fragment.
  
    0.614
ctpA
Carboxy-terminal proteinase, S41 family,peptidoglycan-bound; Belongs to the peptidase S41A family.
  
  
 0.504
lp_2407
Prophage P2a protein 50.
 
    0.479
lp_2419
Prophage P2a protein 38; minor head protein.
  
 
 0.469
lp_2920
Proline-containing amino acid or peptide transport protein.
   
    0.465
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.