STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3158Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6. (200 aa)    
Predicted Functional Partners:
baiE
Bile acid 7-alpha-dehydratase.
 
    0.884
lp_3157
2,5 diketo-D-gluconic acid-like reductase (N-terminal fragment), NADP dependent, (promiscuous).
  
    0.798
lp_1930
Oxidoreductase, atypical SDR family, subgroup 6.
  
     0.761
lp_3161
Hypothetical protein.
 
    0.700
lp_3156
2,5 diketo-D-gluconic acid-like reductase (C-terminal fragment), NADP dependent, (promiscuous).
  
  
 0.610
lp_3160
Multidrug transport protein, major facilitator superfamily (MFS).
  
    0.513
lp_3164
Transcription regulator, TetR family.
 
    0.415
lp_0603
Acetyltransferase, GNAT family.
   
    0.408
lp_2453
Prophage P2a protein 4; AAA ATPase.
   
    0.400
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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