Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lp_3161Hypothetical protein. (125 aa)    
Predicted Functional Partners:
baiE
Bile acid 7-alpha-dehydratase.
 
    0.895
lp_3164
Transcription regulator, TetR family.
 
    0.868
lp_3160
Multidrug transport protein, major facilitator superfamily (MFS).
 
    0.845
lp_3158
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6.
 
    0.713
lp_2871
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.710
lp_2874
Short-chain dehydrogenase/oxidoreductase.
 
    0.639
lp_0681
Prophage P1 protein 58, lysin.
  
     0.634
lp_2401
Prophage P2a protein 56, lysin.
  
     0.599
lp_3097
Transcription regulator, TetR family.
  
    0.597
lp_0138
Nucleoside 2-deoxyribosyltransferase.
  
    0.543
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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