STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpk11Two component system histidine protein kinase; sensor protein. (386 aa)    
Predicted Functional Partners:
rrp11
Two component system response regulator.
 
 0.994
rrp1
Two-component system response regulator.
 
 0.910
rrp5
Two-component system response regulator.
 
 0.899
rrp7
Two-component system response regulator.
 
 0.853
rrp3
Two-component system response regulator,phosphate transport regulon.
 
 0.838
dacA1
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.829
rrp2
Two-component system response regulator.
 
 0.800
lp_2179
Cysteine desulfurase associated protein,DUF1831 family.
  
    0.618
lp_0038
Regulator of two-component system, YycH family.
 
  
 0.602
lp_2234
Hypothetical membrane protein, DUF1461 family.
  
    0.582
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.