Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
lp_3192Hypothetical membrane protein, DUF1275 family. (229 aa)    
Predicted Functional Partners:
lp_3164
Transcription regulator, TetR family.
  
    0.590
lp_2995
Hypothetical membrane protein.
 
    0.570
baiE
Bile acid 7-alpha-dehydratase.
  
    0.567
rrp11
Two component system response regulator.
  
    0.565
hpk11
Two component system histidine protein kinase; sensor protein.
  
    0.542
prtM2
Peptidylprolyl isomerase; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
       0.459
lp_0077
Hypothetical protein, DUF1835 and DUF3658 family domains.
  
    0.438
lp_2569
Hypothetical protein.
  
    0.415
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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