STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3195Hypothetical membrane protein, DUF1129 family. (241 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein/GTPase, Obg family, YchF subfamily; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
    0.824
lp_3197
Hypothetical protein, DUF951 family.
  
    0.770
lp_2179
Cysteine desulfurase associated protein,DUF1831 family.
  
     0.768
lp_2794
Flavodoxin.
  
    0.742
parB2
Chromosome partitioning protein, DNA-binding protein; Belongs to the ParB family.
  
    0.740
parB1
Chomosome partitioning protein, DNA-binding protein; Belongs to the ParB family.
  
    0.738
parA
Chomosome partitioning protein,membrane-associated ATPase.
  
    0.738
gidB
Methyltransferase, cell division protein GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.716
lp_0038
Regulator of two-component system, YycH family.
  
     0.710
ezrA
Septation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
    0.681
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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