Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| lp_1314 | lp_3226 | lp_1314 | lp_3226 | Methyltransferase, SAM-dependent. | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.566 |
| lp_1555 | lp_1724 | lp_1555 | lp_1724 | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 23S rRNA methylase. | 0.436 |
| lp_1555 | lp_3226 | lp_1555 | lp_3226 | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.571 |
| lp_1555 | pheT | lp_1555 | lp_1559 | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.624 |
| lp_1555 | rsmI | lp_1555 | lp_0707 | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.462 |
| lp_1555 | sunL | lp_1555 | lp_1617 | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 16S rRNA m(5)C 967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.500 |
| lp_1724 | lp_1555 | lp_1724 | lp_1555 | 23S rRNA methylase. | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.436 |
| lp_1724 | lp_3226 | lp_1724 | lp_3226 | 23S rRNA methylase. | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.663 |
| lp_1724 | pheT | lp_1724 | lp_1559 | 23S rRNA methylase. | phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.541 |
| lp_1724 | rsmI | lp_1724 | lp_0707 | 23S rRNA methylase. | Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.528 |
| lp_1724 | sunL | lp_1724 | lp_1617 | 23S rRNA methylase. | 16S rRNA m(5)C 967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.528 |
| lp_1724 | trmH | lp_1724 | lp_0612 | 23S rRNA methylase. | tRNA/rRNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.435 |
| lp_3224 | lp_3225 | lp_3224 | lp_3225 | ABC transporter, permease protein. | ABC transporter, ATP-binding protein. | 0.985 |
| lp_3224 | lp_3226 | lp_3224 | lp_3226 | ABC transporter, permease protein. | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.540 |
| lp_3224 | lp_3227 | lp_3224 | lp_3227 | ABC transporter, permease protein. | Hypothetical protein. | 0.446 |
| lp_3225 | lp_3224 | lp_3225 | lp_3224 | ABC transporter, ATP-binding protein. | ABC transporter, permease protein. | 0.985 |
| lp_3225 | lp_3226 | lp_3225 | lp_3226 | ABC transporter, ATP-binding protein. | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.536 |
| lp_3225 | lp_3227 | lp_3225 | lp_3227 | ABC transporter, ATP-binding protein. | Hypothetical protein. | 0.446 |
| lp_3226 | lp_1314 | lp_3226 | lp_1314 | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Methyltransferase, SAM-dependent. | 0.566 |
| lp_3226 | lp_1555 | lp_3226 | lp_1555 | tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | rRNA methylase, SpoU family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.571 |
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