STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_3232Hypothetical protein. (413 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
 
 0.816
lp_3233
Hypothetical protein.
  
    0.790
lp_3228
Metal-dependent hydrolase.
 
    0.737
lp_0680
Prophage P1 protein 57.
   
    0.697
fruA
PTS system, fructose-specific EIIABC component.
     
 0.648
pts27BCA
PTS system, beta-glucosides-specific EIIBCA component.
  
  
 0.605
gpd
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.590
lp_3234
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.549
pts1BCA
PTS system, oligosucrose-specific EIIBCA component.
  
  
 0.521
pts4ABC
PTS system, trehalose-specific IIBC component.
  
  
 0.521
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.