Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_3239Short-chain dehydrogenase/oxidoreductase,atypical SDR family, TMR-like. (287 aa)    
Predicted Functional Partners:
lp_3236
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, TMR-like.
  
     0.729
dgk1
Deoxyadenosine kinase / deoxyguanosine kinase.
   
 0.603
dgk2
Deoxynucleoside kinase.
   
 0.603
lp_0869
Extracellular protein, Ser/Thr-rich.
   
 0.573
lp_3343
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, TMR-like.
  
    0.564
lp_3238
Transcription regulator, MerR family.
  
    0.560
lp_2305
Zinc-dependent proteinase, M16 family.
   
 
 0.559
lp_2306
Non-proteolytic protein, peptidase family M16.
   
 
 0.559
dltC2
D-alanine-poly(phosphoribitol) ligase, subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.
   
 0.524
acpA1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.524
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.