STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3245Hypothetical protein. (424 aa)    
Predicted Functional Partners:
lp_1815
Hypothetical membrane protein.
  
     0.769
wapA
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.757
lp_0138
Nucleoside 2-deoxyribosyltransferase.
  
    0.750
lp_3450
Cell surface protein, CscC family.
  
    0.748
lp_1767
Glycosyl hydrolase, family 25.
  
     0.715
lp_3139
Hypothetical membrane protein, DUF805 family.
  
     0.707
lp_2809
Extracellular protein.
  
     0.683
lp_2925
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.682
lp_0078
Permease, drug/metabolite transporter (DMT) superfamily.
  
  
 0.681
lp_2396
Extracellular protein, DUF 1093 family,membrane-bound.
  
    0.673
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.