STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrgBMurein hydrolase regulator. (242 aa)    
Predicted Functional Partners:
lrgA
Murein hydrolase export protein.
 
  
 0.999
pstF
Phosphate ABC transporter, substrate binding protein.
   
  
 0.550
rpoN
DNA-directed RNA polymerase, sigma factor 54.
   
  
 0.513
lp_3256
DegV family protein.
  
    0.489
lamB
Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family.
      
 0.483
cydA
Cytochrome D ubiquinol oxidase, subunit I.
     
 0.475
lp_2162
Extracellular protein, NlpC/P60 family,gamma-D-glutamate-meso-diaminopimelate muropeptidase.
     
 0.443
lp_3125
Fumarate reductase, flavoprotein subunit precursor.
   
  
 0.437
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.