Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
crtNDehydrosqualene desaturase. (498 aa)    
Predicted Functional Partners:
crtM
Dehydrosqualene synthase.
  
 0.999
lp_0925
Acyltransferase.
   
  
 0.765
lp_0856
Acyltransferase.
      
 0.752
kat
Catalase; Belongs to the catalase family.
   
  
 0.586
lp_1700
Hypothetical membrane protein, TspO/MBR family.
 
  
 0.584
lp_1703
Diacylglycerol kinase family protein.
   
    0.574
idi1
Isopentenyl diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.443
lp_3265
Cell surface hydrolase, membrane-bound.
  
    0.423
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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