STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3278Amino acid transport protein. (474 aa)    
Predicted Functional Partners:
gdh
Glutamate dehydrogenase, NADP-specific; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.708
livA
Branched-chain amino acid ABC transporter,substrate binding protein.
   
  
 0.707
mtsC
Manganese ABC transporter, ATP-binding protein.
      
 0.654
pnuC1
Nicotinamide mononucleotide transporter.
      
 0.648
lp_3050
Extracellular transglycosylase, membrane-bound.
   
  
 0.638
pyrAB
Carbamoyl-phosphate synthase,pyrimidine-specific, large chain.
    
 
 0.602
lp_0018
Oligopeptide ABC transporter,oligopeptide-binding protein.
   
  
 0.570
copA
Copper transporting ATPase.
     
 0.566
copB
Copper transporting ATPase.
     
 0.564
cblB
Cystathionine beta-lyase / cystathionine gamma-lyase.
     
 0.563
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.