STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3302Metal ion ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family. (302 aa)    
Predicted Functional Partners:
znuB
Zinc/iron ABC transporter, permease protein.
 
  
 0.918
znuC
Zinc/iron ABC transporter, ATP-binding protein.
 
  
 0.897
mtsB
Manganese ABC transporter, permease protein.
 
  
 0.886
mtsC
Manganese ABC transporter, ATP-binding protein.
 
  
 0.855
lp_3301
Bacteriocin transport protein.
  
    0.523
rpsN2
30S ribosomal protein S14-2; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.457
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.456
lp_0868
Metal uptake regulator; Belongs to the Fur family.
 
  
 0.455
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.446
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.