STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3310Hypothetical membrane protein, VanZ-like family. (171 aa)    
Predicted Functional Partners:
lp_3433
Endoglucanase E-like protein, SGNH hydrolase family.
  
    0.618
lp_3419
Hypothetical protein.
  
     0.579
lp_3348
Hypothetical protein.
  
    0.527
lp_0335
Hypothetical protein.
  
    0.504
zmp1
Extracellular zinc metalloproteinase, M10 family.
  
     0.496
lp_0279
Hypothetical protein.
  
     0.479
lp_1988
Hypothetical membrane protein.
  
    0.475
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.468
licD
Lipooligosaccharide cholinephosphotransferase.
  
    0.443
lp_2820
Hypothetical membrane protein, DUF1440 family.
  
    0.432
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.