STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3341Cell surface hydrolase, DUF915 family,membrane-bound. (298 aa)    
Predicted Functional Partners:
rhe1
ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
   
  
 0.840
lp_3205
Cell surface hydrolase, DUF915 family,membrane-bound.
  
    0.602
lp_1866
Extracellular protein, DUF2140 family.
  
     0.511
pgpA
Phosphatidylglycerophosphatase.
       0.488
lp_2333
Hypothetical protein, DUF1694 family.
  
     0.454
lp_1572
Hypothetical protein.
  
     0.423
lp_0438
Hypothetical protein, DUF3284 family.
  
     0.422
lp_3339
Amino acid transport protein.
       0.410
lp_3590
Hypothetical protein, DUF1694 family.
  
     0.407
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.