Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
copBCopper transporting ATPase. (679 aa)    
Predicted Functional Partners:
lp_3058
Copper-binding protein.
 
    0.857
copA
Copper transporting ATPase.
  
   
0.760
copR
Transcription regulator of CopAB ATPases.
  
  
 0.739
lp_3057
Copper-binding protein.
  
    0.717
lp_3442
Heavy metal binding protein.
 
 
 0.708
mtsC
Manganese ABC transporter, ATP-binding protein.
  
  
 0.594
pva2
Penicillin V acylase family protein.
  
    0.586
pnuC1
Nicotinamide mononucleotide transporter.
      
 0.541
lp_0304
Extracellular transglycosylase.
      
 0.540
lp_0302
Extracellular transglycosylase.
      
 0.533
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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