STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3384Prophage P3 protein 6. (73 aa)    
Predicted Functional Partners:
lp_3385
Prophage P3 protein 5.
  
    0.930
lp_3382
Prophage P3 protein 8, DNA primase/helicase.
  
    0.918
lp_3383
Prophage P3 protein 7, DNA replication.
  
    0.895
lp_3388
Prophage P3 protein 3, phage-like repressor,N-term domain.
  
    0.772
lp_3387
Prophage P3 protein 4.
  
    0.728
lp_3381
Prophage P3 protein 9.
   
    0.548
lp_3379
Prophage P3 protein 11, DNA replication.
   
    0.524
lp_3380
Prophage P3 protein 10.
   
    0.479
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.