Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dps2DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family. (184 aa)    
Predicted Functional Partners:
lp_3442
Heavy metal binding protein.
 
  
 0.999
cadA
Cadmium transporting P-type ATPase.
 
  
 0.942
lp_3444
Transcription regulator, Crp family.
 
  
 0.912
lp_2521
Transcription regulator, AsnC-type.
      
 0.836
lp_1442
Transcription regulator, Crp/FNR family.
 
  
 0.741
lp_1440
Hypothetical protein.
  
    0.708
lp_3069
Medium-chain degydrogenase/reductase, Qor family.
   
    0.706
lp_3070
Fe-S cluster biosynthesis protein; Belongs to the HesB/IscA family.
   
    0.706
ribC1
Bifunctional protein: riboflavin kinase; FMN adenylyltransferase.
   
    0.703
hpk4
Two-component system histidine protein kinase; sensor protein.
   
    0.703
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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