Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_3448Acetyltransferase, GNAT family. (157 aa)    
Predicted Functional Partners:
lp_1806
Hypothetical protein, DUF960 family.
  
    0.761
lp_2669
Hypothetical protein.
  
     0.752
lp_0568
Hypothetical protein.
 
    0.710
lp_0340
Hypothetical protein.
  
    0.681
lp_2393
Lipoprotein precursor.
  
    0.626
lp_2641
Hypothetical protein.
  
    0.612
lp_2175
Cell surface protein, CscC family.
  
    0.583
lp_2987
Hypothetical protein.
  
    0.572
lp_0995
Hypothetical protein.
  
    0.561
lp_0438
Hypothetical protein, DUF3284 family.
  
    0.551
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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