STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ramRTranscription regulator, AraC family,GlcNAc-like induced. (328 aa)    
Predicted Functional Partners:
ram1
alpha-L-rhamnosidase.
 
   
 0.974
ramP2
Disaccharride transporter, major facilitator super family (MFS).
 
    0.890
ram2
alpha-L-rhamnosidase.
 
    0.878
ramP1
Disaccharride transporter, major facilitator super family (MFS).
 
  
 0.870
lp_0935
Hypothetical protein.
 
     0.716
cps3B
Glycosyltransferase, family 2 (GT2).
      
 0.709
cps2C
Polysaccharide biosynthesis protein,phosphotyrosine-protein phosphatase.
      
 0.639
cps3J
Glycosyltransferase.
      
 0.503
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
  
   
 0.456
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
  
 0.453
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.