STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafRTranscription regulator. LacI family, raffinose related. (331 aa)    
Predicted Functional Partners:
scrR
Oligosucrose operon repressor.
  
   
 0.913
rbsR
Transcription regulator, LacI family, ribose.
  
  
 0.877
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.814
ccpB
Catabolite control protein B / transcription regulator, LacI family.
  
  
 0.775
galT
UTP-galactose-1-P uridylyltransferase.
 
  
 0.742
galM3
Aldose 1-epimerase.
 
  
 0.741
lp_3669
DegV family protein.
  
  
 0.709
lacS
Lactose/raffinose/galactose permease; PTS regulated carbohydrate transporter, GPH family, lactose (can switch between symport (H+) and antiport (galactose)).
 
   
 0.706
araR
Transcription regulator, GntR family.
  
     0.647
rafP
Lactose/raffinose/galactose permease; PTS regulated carbohydrate transporter, GPH family, raffinose/melibiose/galactose (can switch between symport (H+) and antiport (lactose)).
 
  
 0.627
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.