Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trePTrehalose phosphorylase. (734 aa)    
Predicted Functional Partners:
pgmB1
Beta-phosphoglucomutase.
 
 0.998
pgmB2
Beta-phosphoglucomutase.
 
 0.998
treA
Trehalose-6-phosphate hydrolase.
  
 
 0.954
mapB
Maltose phosphorylase.
  
 
0.939
mapA
Maltose phosphorylase.
  
 
0.935
araR
Transcription regulator, GntR family.
     
 0.550
srlD1
Sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.504
lacA
Beta-galactosidase I.
   
  
 0.481
lp_3531
Transcription regulator, LacI family.
  
  
 0.470
calB
Coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  
 0.468
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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