STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trePTrehalose phosphorylase. (734 aa)    
Predicted Functional Partners:
pgmB2
Beta-phosphoglucomutase.
  
 0.982
pgmB1
Beta-phosphoglucomutase.
  
 0.981
lacA
Beta-galactosidase I.
   
  
 0.565
srlD1
Sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.549
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.534
lp_3531
Transcription regulator, LacI family.
  
  
 0.459
bglG5
Transcription antiterminator, BlgB family.
  
    0.453
mdxE
Maltodextrin ABC transporter, substrate binding protein.
  
  
 0.444
lp_0178
Maltodextrin ABC transporter, accessory protein.
  
  
 0.440
agl
Alpha-glucosidase (malto-oligosaccharides); Belongs to the glycosyl hydrolase 31 family.
 
  
 0.435
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.