STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3531Transcription regulator, LacI family. (325 aa)    
Predicted Functional Partners:
lp_3649
Transcription regulator, GntR family.
  
     0.724
lp_3533
Carbohydrate symporter, GPH family,maltose-isomaltose (or trehalose), not sucrose.
 
   
 0.718
araR
Transcription regulator, GntR family.
 
    0.685
lacS
Lactose/raffinose/galactose permease; PTS regulated carbohydrate transporter, GPH family, lactose (can switch between symport (H+) and antiport (galactose)).
  
  
 0.648
agl
Alpha-glucosidase (malto-oligosaccharides); Belongs to the glycosyl hydrolase 31 family.
 
   
 0.553
lacL
Beta-galactosidase, large subunit.
  
  
 0.531
ccpB
Catabolite control protein B / transcription regulator, LacI family.
  
  
0.517
lp_3221
Transcription regulator, LacI family,sucrose-related.
  
  
0.510
ptsH
Phosphocarrier protein Hpr.
   
 
 0.485
malA1
Maltase/sucrase.
  
  
 0.476
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.