Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pts35BPTS system, galactitol-specific EIIB component. (98 aa)    
Predicted Functional Partners:
pts35C
PTS system, galactitol-specific EIIC component.
 
 
 0.998
pts35A
PTS system, galactitol-specific EIIA component.
 
 
 0.995
pts36C
PTS system, galactitol-specific EIIC component.
 
 
 0.983
pts36A
PTS system, galactitol-specific EIIA component.
 
 
 0.982
pts36B
PTS system, galactitol-specific EIIB component.
  
 
  0.943
lp_3545
D-arabitol-phosphate dehydrogenase.
 
    0.937
ptsH
Phosphocarrier protein Hpr.
  
 
 0.911
gabT
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
      
 0.757
pts4ABC
PTS system, trehalose-specific IIBC component.
  
  
 0.669
pts5ABC
PTS system, trehalose-specific IIBC component.
  
  
 0.654
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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