STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3559Transcription regulator, RpiR family. (273 aa)    
Predicted Functional Partners:
rex
Redox-sensitive transcription regulator; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
 
  
 0.724
lp_3566
N-acetylglucosamine 2-epimerase.
 
   
 0.723
nanE
N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.720
nanA
N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate.
 
  
 0.682
lp_3563
Sodium-coupled N-acetylneuraminate transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.671
dhaT
1,3-propanediol dehydrogenase.
  
  
 0.650
lp_1931
Hypothetical protein.
   
    0.586
nox
NADH oxidase (putative).
      
 0.483
nanK
Bifunctional protein: N-acetyl mannosamine kinase, ROK family; transcription regulator.
 
  
 0.454
lp_0125
Purine nucleoside phosphorylase.
   
  
 0.433
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.