Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_3575Hypothetical membrane protein. (182 aa)    
Predicted Functional Partners:
lp_3577
Hypothetical membrane protein.
  
  
 0.915
ecfA2
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
 0.868
napA4
Na(+)/H(+) antiporter.
   
  
 0.857
lp_3574
Hypothetical protein.
  
    0.799
ecfT
ABC transporter, permease protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.767
lp_0164
Hypothetical membrane protein, DUF1393 family.
  
    0.755
lp_0148
Cobalt (or cobalamine) ABC transporter,permease protein.
  
 
 0.736
lp_3563
Sodium-coupled N-acetylneuraminate transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.693
araP
Arabinose (promiscuous) transporter, major facilitator superfamily (MFS); Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
  
 0.678
lp_0217
ABC transporter, permease protein.
  
 
 0.639
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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