STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3577Hypothetical membrane protein. (81 aa)    
Predicted Functional Partners:
lp_3575
Hypothetical membrane protein.
  
  
 0.906
napA4
Na(+)/H(+) antiporter.
   
  
 0.849
lp_3576
Hypothetical protein.
       0.755
lp_1747
Nucleotide-binding protein, universal stress protein UspA family.
  
    0.743
lp_3563
Sodium-coupled N-acetylneuraminate transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.706
lp_1708
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.655
araP
Arabinose (promiscuous) transporter, major facilitator superfamily (MFS); Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
  
 0.654
asp2
Alkaline shock protein.
 
  
 0.577
clpL
ATP-dependent Clp protease, ATP-binding subunit ClpL; Belongs to the ClpA/ClpB family.
   
  
 0.566
rpoD
DNA-directed RNA polymerase, sigma factor 42; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
  
 0.556
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.