STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3588Transcription regulator, Rrf2 family. (141 aa)    
Predicted Functional Partners:
pox4
Pyruvate oxidase; Belongs to the TPP enzyme family.
  
    0.576
iscS
Cysteine desulfurase.
  
  
 0.537
csd2
Cysteine desulfurase.
  
  
 0.534
lox
NAD-independent L-lactate dehydrogenase.
  
    0.518
rpoD
DNA-directed RNA polymerase, sigma factor 42; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.510
lp_0360
Transcription regulator, Rrf2 family.
  
    0.489
lp_2212
NADH-flavin reductase.
  
  
 0.480
sufU
SUF system FeS assembly protein, NifU family.
  
  
 0.476
pox5
Pyruvate oxidase; Important for the aerobic growth. Decarboxylates pyruvate in four steps. The energy released is partially stored in acetyl phosphate.
  
    0.474
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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